PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00122g00157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 703aa    MW: 77518.9 Da    PI: 9.0591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00122g00157.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08604653147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Peaxi162Scf00122g00157.1 604 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 653
                               678999********************9776668**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.21E-9399485IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.383599658IPR017930Myb domain
SMARTSM007175.3E-8603656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10604654IPR009057Homeodomain-like
CDDcd116607.83E-17605655No hitNo description
SuperFamilySSF466899.4E-16605686IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MVLDKRLDCG FNGYQVPPIP RATRSARGRG NIRKKSDGKG MFAFDLLTSV AGKLLLEGES  60
APDSTDPRSG KDQPAVVKDT VETLKDYEDT SLKENSYNKG CRERGFFISQ IVSEAPVVNH  120
CLSDLTDTFS GPASIITSSD CSEKLGSAEQ FINGDSTHET RNCSTKGELG SSGCGGFSGC  180
TFSTESKKRM KMDLSNDAKI SNIKKDEICS SEFPDLWDRK PSMPVASDKT VKLSLSTDPD  240
AFGSFPMIQN DVKLAIKDDD ERKSYGCTQP STRNKVFRPA PRVGDWRMRK SQASKYWKDN  300
PTSDDEAHIN VDSEARHVYQ NRKNDQSSQR CQSDFPFKKR KLFYCNSFSN SDGGSSNGKC  360
NSPTRDLDRD AAVHSLSSSG ARVAAGTSIP RGTRASFRSS DSHVKLKIKS FRVPELFVEI  420
PENATVGSLK ALTAILGGGL RIGVVFQGKK VRDDNKTLWQ AGISHDDKLD ALGFSLEPNP  480
SQASAPLHPE GRSCVLPCDT PQTLTRLKSP DDCPHSRCTP APIVIHNRIQ QGTYNAFSDH  540
PGTNLTNFIE SDHDSAPSPP DASLERGAAD SRALVPVGAV NAEALAVVPV RNPKRSETAQ  600
RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KMRAFDNAKH RTYVDLKDKW KTLVHTARIS  660
PQQRRGEPVP QELLDRVLIA HAYWSQQQAK QQMKHQSETR LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-555946947107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080195.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080194.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080193.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080192.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-140TRF-like 2